#dna-sequencing

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fromArs Technica
4 days ago

OpenAI starts offering a biology-tuned LLM

OpenAI has tuned the model to be more skeptical, so it's more likely to tell you when something is a bad drug target. The former was defined as being able to work through complex, multi-step processes, while the latter was derived from the model's performance on a handful of benchmarks.
Artificial intelligence
OMG science
fromNature
1 week ago

The air is full of DNA - here's what scientists are using it for

Airborne DNA is a new frontier for studying ecosystems, monitoring species, and assessing conservation efforts.
Medicine
fromNature
6 days ago

Landmark ancient-genome study shows surprise acceleration of human evolution

Human evolution has accelerated over the past 10,000 years, with significant gene variants identified in ancient populations from western Eurasia.
#genetics
fromNature
1 week ago
Science

Daily briefing: A treatment to reverse cellular ageing is about to be tested in people

Science
fromNature
1 week ago

Daily briefing: A treatment to reverse cellular ageing is about to be tested in people

Partial reprogramming may enter clinical trials soon, and a DNA tweak can induce sex reversal in female mice.
Artificial intelligence
fromFast Company
1 week ago

AI is rewriting the rules of biological experiments, but safety regulations aren't keeping up

AI is autonomously designing and running biological experiments, outpacing current governance systems meant to regulate these capabilities.
fromNature
2 weeks ago

How DNA forensics is transforming studies of ancient manuscripts

"It had its own biography, its own deep history. It seemed like an archaeological site between covers," recalls Stinson, who is now a medievalist at North Carolina State University in Raleigh.
History
Data science
fromMedium
2 weeks ago

In-Silico Perturbation Meets Single-Cell Foundation Models: From Zero-Shot Potential to Fine-Tuned...

In-silico perturbation simulates cellular state changes, but biological trustworthiness remains a challenge despite advancements in single-cell foundation models.
#aging
OMG science
fromNature
2 weeks ago

This method to reverse cellular ageing is about to be tested in humans

Yuancheng Ryan Lu's research on reprogramming retinal nerve cells could lead to restoring eyesight and rejuvenating organs.
OMG science
fromNature
2 weeks ago

This method to reverse cellular ageing is about to be tested in humans

Yuancheng Ryan Lu's research on reprogramming retinal nerve cells could lead to restoring eyesight and rejuvenating organs.
SF parents
fromHigh Country News
2 weeks ago

A DNA archive critical to identifying missing migrants has itself gone missing - High Country News

Colibrí Center's missing-persons database has become inaccessible, leaving families without hope for identifying missing migrants.
#gene-editing
Medicine
fromArs Technica
1 week ago

Clinical trial shows gene editing works for -Thalassaemia, too

An improved gene editing system reactivates a fetal hemoglobin gene to treat β-Thalassaemia, building on CRISPR's success with sickle-cell anemia.
Medicine
fromArs Technica
1 week ago

Clinical trial shows gene editing works for -Thalassaemia, too

An improved gene editing system reactivates a fetal hemoglobin gene to treat β-Thalassaemia, building on CRISPR's success with sickle-cell anemia.
#genomics
fromTechCrunch
3 weeks ago
Data science

Mantis Biotech is making 'digital twins' of humans to help solve medicine's data availability problem | TechCrunch

fromwww.cbc.ca
2 months ago
Public health

New project aims to map genomes of Black Canadians, provide better health outcomes | CBC News

A genCARE project will map genomes of over 10,000 Black Canadians to enable targeted, equitable care for diseases that disproportionately affect Black communities.
fromwww.theguardian.com
2 months ago
Science

Google DeepMind launches AI tool to help identify genetic drivers of disease

AlphaGenome predicts how mutations alter gene regulation to identify disease-driving variants, map tissue-specific functional elements, and guide gene-therapy design.
Data science
fromTechCrunch
3 weeks ago

Mantis Biotech is making 'digital twins' of humans to help solve medicine's data availability problem | TechCrunch

Large language models can enhance genomics and clinical practices, but struggle with rare diseases due to data scarcity.
fromwww.cbc.ca
2 months ago
Public health

New project aims to map genomes of Black Canadians, provide better health outcomes | CBC News

Medicine
fromNature
1 week ago

Saturation editing of RNU4-2 reveals distinct dominant and recessive disorders - Nature

De novo variants in RNU4-2 cause ReNU syndrome, a neurodevelopmental disorder characterized by developmental delays and other severe symptoms.
#ai
Medicine
fromFast Company
2 weeks ago

AI is coming for superbugs

AI can significantly enhance antibiotic discovery, addressing the urgent global health crisis of antibiotic resistance.
fromNature
1 month ago

In vivo site-specific engineering to reprogram T cells - Nature

Using CRISPR-Cas9 and adeno-associated virus (AAV)-mediated homology-directed repair, we targeted CAR integration into the endogenous human TCR alpha locus (TRAC). TRAC-CAR T cells display dynamic CAR expression that delays exhaustion and improves tumour control in xenograft and immunocompetent models. This work has been critical for the development of allogeneic CAR T cell therapy, as it disrupts the TCR after transgene insertion—a necessary step to limit graft-versus-host disease.
Cancer
fromNature
4 weeks ago

Can a mouse be cloned indefinitely? Decades-long experiment has answers

Asexual reproduction is ultimately unsustainable for mice, and potentially other mammals, too. The clones looked normal and lived as long as normal mice. But large mutations - including the loss of an entire chromosome - accumulated in the cloned lineage at an unusually high rate.
OMG science
Science
fromNature
4 weeks ago

Zombieland: Genome transplant brings 'dead' bacteria back to life

Researchers have revived 'dead' bacterial cells by replacing their DNA with a working genome from another species, advancing genome engineering.
OMG science
fromNature
4 weeks ago

How DNA in dirt is shaking up the study of human origins

Ancient DNA can be recovered from sediments, revolutionizing the study of extinct species and the history of ecosystems.
Artificial intelligence
fromFortune
1 month ago

Could data from 100 million species help cure disease? One startup is betting on it | Fortune

Basecamp Research launches the Trillion Gene Atlas to map genetic diversity across 100 million species, aiming to expand biological knowledge 100-fold through AI-powered genomic data collection.
fromNextgov.com
1 month ago

Tech bills of the week: Improved biological data for research; Section 702 reform; and more

Ushering in the Golden Age of Innovation is about more than just winning the global tech race - it's about securing the safety and prosperity of our country for generations to come. Our bill is an important step in this effort and will better ensure the United States has the infrastructure in place to lead the 21st century.
EU data protection
Science
fromFuturism
1 month ago

Scientists Bring Mouse Brains Back to Life After "Cryosleep" Deep Freeze

Researchers are advancing towards cryosleep by restoring activity in mouse brains using vitrification, potentially aiding organ preservation and brain injury recovery.
Science
fromNature
1 month ago

Synthetic circuits for cell ratio control - Nature

Synthetic biology enables artificial cell differentiation and division of labor by engineering genetic and epigenetic circuits that mimic natural stem cell asymmetric division processes.
fromwww.theguardian.com
1 month ago

Can scientists really resurrect the dodo? Inside the company that says they can

Colossal Biosciences, valued at $10.2bn after raising hundreds of millions of dollars in funding from investors including celebrities spanning from Tiger Woods to Paris Hilton, has provoked a stampede of acclaim as well as denunciation after announcing last year it had made the dire wolf, a species lost from the world for more than 10,000 years, de-extinct via the birth of three new pups.
OMG science
Silicon Valley
fromKqed
1 month ago

How South San Francisco Became the Birthplace of Biotechnology | KQED

South San Francisco transformed from an industrial meatpacking and steel manufacturing hub into the world's biotechnology capital, hosting over 250 biotech companies including Genentech.
Venture
from24/7 Wall St.
1 month ago

Forget AI. This Biotech Stock's Taking Off Right Now

AI stocks face correction risk due to rising capital expenditures without proportional profits, making biotech an undervalued alternative for AI-driven growth exposure.
fromNews Center
2 months ago

AI Model May Improve RNA Sequencing Research - News Center

Scientists in the laboratory of Rendong Yang, PhD, associate professor of Urology, have developed a new large language model that can interpret transcriptomic data in cancer cell lines more accurately than conventional approaches, as detailed in a recent study published in Nature Communications. Long-read RNA sequencing technologies have transformed transcriptomics research by detecting complex RNA splicing and gene fusion events that have often been missed by conventional short-read RNA-sequencing methods.
Cancer
Tech industry
from24/7 Wall St.
2 months ago

NVIDIA Just Made a Bigger Push Into AI Drug Discovery

Nvidia's stock has traded sideways for six months despite strong AI demand and strategic deals that may enable an eventual breakout.
fromwww.theguardian.com
1 month ago

I clicked on a button and everything changed': how a DNA test turned my life upside-down

It was another detail that the rest of the family apparently knew but had never told me; they thought I already knew. The biology mattered less to me than the secret. Dad had been adopted, it turned out. A classic affliction of the 1950s, in which young, unmarried couples were forced to give away their newborn babies.
Books
fromFortune
1 month ago

Desperate federal investigators weigh using DNA genealogy websites for Nancy Guthrie case | Fortune

The strategy could be fruitful: If unidentified DNA evidence can be connected to someone - even a distant relative - in a common genealogy database, it would give investigators more information and possibly lead to a suspect in Guthrie's kidnapping in Arizona. "It's a fantastic tool," said Ruth Ballard, a geneticist in California who specializes in DNA and has testified in hundreds of court cases. "If it's a good quality sample and they're able to get a profile, they could find a hit on that fairly quickly."
US news
Science
fromNature
1 month ago

From cancer to Alzheimer's: could a renewed focus on energy transform biomedicine?

Energy flow, governed by universal physics principles, provides a more fundamental understanding of biological processes and disease than molecular mechanisms alone.
Public health
fromwww.bbc.com
2 months ago

NHS cancer gene database to identify patients at risk

NHS England is creating a national register of 120 cancer-linked genes to identify inherited risk and enable targeted screening, monitoring, and personalized treatment.
fromwww.scientificamerican.com
1 month ago

Scientists gave the same sample to seven at-home microbiome tests. The results were dramatically different

Scientists have long known that vast colonies of bacteria, viruses and other microorganisms—a population collectively called the microbiome—live on and inside the human body. But how they influenced our health was long a mystery. In just the past few years, we've learned that myriad factors, from the food that we consume to the amount of time that we spend sleeping to our genes to our home, all affect our microbiome.
Health
US news
fromwww.mercurynews.com
1 month ago

Genealogical sites have helped solve major crimes. Police in Nancy Guthrie's case might turn to them

Investigators may use DNA genealogy databases to match DNA from Nancy Guthrie's case and potentially identify suspects or relatives when CODIS yields no matches.
Science
fromArs Technica
1 month ago

Large genome model: Open source AI trained on trillions of bases

Evo 2, an AI system trained on trillions of base pairs from all life domains, can identify genes, regulatory sequences, and splice sites in complex genomes including humans.
#alphagenome
fromArs Technica
1 month ago

Have we leapt into commercial genetic testing without understanding it?

Martschenko's argument is largely that genetic research and data have almost always been used thus far as a justification to further entrench extant social inequalities. But we know the solutions to many of the injustices in our world-trying to lift people out of poverty, for example-and we certainly don't need more genetic research to implement them. Trejo's point is largely that more information is generally better than less.
Science
OMG science
fromNature
2 months ago

Regulatory grammar in human promoters uncovered by MPRA-based deep learning - Nature

Massively parallel reporter assays provide cell-type-specific causal training data enabling more direct inference of DNA sequence effects on promoter activity than epigenomic maps.
Science
fromNature
2 months ago

Construction of complex and diverse DNA sequences using DNA three-way junctions - Nature

DNA writing remains limited by short oligo synthesis and two-way junction assembly methods, hindering affordable, scalable construction of large, complex synthetic DNA.
Medicine
fromwww.nature.com
2 months ago

Pre-incision structures reveal principles of DNA nucleotide excision repair

Nucleotide excision repair removes bulky DNA lesions via coordinated recognition, verification, excision, and resynthesis to maintain genome stability and prevent cancer and premature ageing.
Science
fromwww.scientificamerican.com
2 months ago

Google DeepMind unleashes new AI to investigate DNA's dark matter'

AlphaGenome predicts functional effects of mutations in long noncoding DNA sequences up to one million base pairs, helping interpret genomic variants for disease research.
OMG science
fromNature
1 month ago

Why 'quantum proteins' could be the next big thing in biology

Fluorescent proteins from crystal jellyfish are being transformed into quantum bits to create highly sensitive quantum sensors for biological applications.
Medicine
fromThe Atlantic
2 months ago

Their Mutated Genes Were Supposed to Be Harmless

People who carry single-gene mutations for disorders like thalassemia can experience real health effects, including lethargy and fainting, despite being labeled asymptomatic.
fromwww.nature.com
1 month ago

Genetically encoded assembly recorder temporally resolves cellular history

GEMINI leverages a computationally designed protein assembly as an intracellular memory device to record the history of individual cells. GEMINI grows predictably within live cells, capturing cellular events as tree-ring-like fluorescent patterns for imaging-based retrospective readout. Absolute chronological information of activity histories is attainable with hour-level accuracy.
Medicine
fromNature
2 months ago

China's biotech boom: why the nation must collaborate to stay ahead

China leads in drug manufacturing and biotech innovation, but geopolitical scrutiny and moves toward a closed biotech ecosystem threaten scientific collaboration and global medicine access.
Medicine
fromenglish.elpais.com
1 month ago

The very long road from a cancer cure' in mice to one in humans

Promising mouse cancer cures often fail to become safe, effective human drugs; premature media claims can create false patient expectations and hinder responsible research progress.
fromNature
1 month ago

AI tools can design genomes. Will they upend how life evolves?

Biology is undergoing a transformation. After centuries of studying life as it evolves naturally, researchers are now using a combination of computation and genome engineering to intervene, generating new proteins and even whole bacteria from scratch. The use of artificial-intelligence tools to design biological components, an approach known as generative biology, is set to turbocharge this area of research. Just last year, scientists used AI-assisted design to produce artificial genes that can be expressed in mammalian cells.
Science
Science
fromwww.nature.com
2 months ago

Scalable and multiplexed recorders of gene regulation dynamics across weeks

CytoTape enables multiplexed, genetically encoded, spatiotemporally scalable recording of gene regulation dynamics in single cells for up to three weeks with minute-scale resolution.
Medicine
fromSilicon Canals
2 months ago

Europe Oncology Genomics Tracker Captures Oncologist Perspectives Across Major European Markets - Data Report by DeciBio Consulting LLC - Silicon Canals

Genomic testing adoption for solid tumor oncology is growing across EU-5 with varied country-specific drivers and infrastructure tracked via a survey of 100+ oncologists.
Science
fromMail Online
2 months ago

Scientists use AI to create a virus never seen before

Scientists used AI and gene-assembly tools to create Evo-Φ2147, a novel 11-gene virus designed to kill pathogenic E. coli.
Science
fromNature
2 months ago

'Remote controlled' proteins illuminate living cells

Engineered magnetically sensitive fluorescent proteins enable remote modulation of brightness in cells and animals, offering quantum-based control for biosensors and potential therapies.
fromFortune
2 months ago

AI drug startup Insilico Medicine launches an AI 'gym' to help models like GPT and Qwen be good at science | Fortune

Generalist models "fail miserably" at the benchmarks used to measure how AI performs scientific tasks, Alex Zhavoronkov, Insilico's founder and CEO, told Fortune. " You test it five times at the same task, and you can see that it's so far from state of the art...It's basically worse than random. It's complete garbage." Far better are specialist AI models that are trained directly on chemistry or biology data.
Science
Science
fromwww.scientificamerican.com
2 months ago

How long you live may depend much more on your genes than scientists thought

Heritability of human lifespan roughly doubles to about 50% when extrinsic mortality is removed, showing a stronger genetic influence on intrinsic aging.
Science
fromWIRED
2 months ago

He Went to Prison for Gene-Editing Babies. Now He's Planning to Do It Again

He Jiankui created the first gene-edited babies, was jailed and banned, and now seeks to resume controversial genetic research despite widespread germline-editing prohibitions.
fromNature
2 months ago

Nanoscience is latest discipline to embrace large-scale replication efforts

Calling nanoscientists: your field needs you to try to replicate a landmark finding that quantum dots can act as biosensors inside living cells. As part of the first large-scale effort in the physical sciences to tackle the reproducibility crisis, researchers in France and the Netherlands are offering funds and resources in exchange for a few months of work. "We are trying to use
Science
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